Magomet Aushev

Genome Engineering • Developmental Biology • Mitochondrial Biology • Molecular Biology • Cell Biology

Engineering genomes to understand development and prevent disease transmission

I am a life sciences researcher working at the intersection of genome editing, embryo development, and mitochondrial biology. In my spare time, I develop games, train machine learning models, and create computer-generated visuals.

Currently, I am conducting research on early embryo development in the labs of Prof. Mary Herbert at Newcastle University and Prof. Kathy Niakan at Cambridge University as part of the Wellcome Human Developmental Biology Initiative (HDBI). At the Wellcome Centre for Mitochondrial Research I worked on mitochondrial donation (also known as mitochondrial replacement therapy or three-person IVF). During my PhD I developed an ex vivo gene therapy for epidermolysis bullosa simplex using gene editing.

Professional photo of Magomet Aushev
Magomet Aushev, PhD
Open to roles

Short bio

Current role

Postdoctoral Researcher working on the Wellcome Human Developmental Biology Initiative (HDBI).

  • Working on early development.
  • Mapping cell cycle transitions in embryos.
  • Analysis of 4D and 3D imaging data.
  • Generation of reporter embryos using CRISPR-Cas9 and related technologies.
  • Development of new methods to study early development.
  • Involved in HDBI’s public dialogue on early embryo research (report).

Previous experience & expertise

  • Gene editing tech: CRISPR-Cas9, CRISPR-Cas13, TALEN.
  • Developmental biology: egg and embryo micromanipulation, live cell imaging.
  • Molecular: cloning, in vitro transcription, qPCR, NGS, pyrosequencing, mtDNA copy number, mtDNA heteroplasmy.
  • Computation: image analysis, data analysis, Python, sequence analysis pipelines, off-target analysis.

Timeline

  1. 2025 – Present
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    Adjunct Researcher — Monash University
  2. 2025 – Present
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    Researcher — Cambridge University
  3. 2020 – Present
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    Postdoctoral Researcher — Wellcome Human Developmental Biology Initiative (HDBI), Newcastle University
    Project: Mapping cell cycle transitions and generating reporter embryos
  4. 2017 – 2020
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    Postdoctoral Researcher — Wellcome Centre for Mitochondrial Research, Newcastle University
    Project: Mitochondrial donation
  5. 2012 – 2016
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    PhD, Applied Genetics — Newcastle University
    Thesis: Developing ex vivo gene therapy for epidermolysis bullosa simplex
  6. 2011 – 2012
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    MRes, Stem Cells and Regenerative Medicine — Newcastle University
  7. 2008 – 2011
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    BSc (Hons), Biotechnology — Newcastle University

Research interests

🧬

Genome engineering

Advancement of genome editing technologies and their application to nuclear and mitochondrial DNA.

🧩

Protein Design & Engineering

Rational and AI-driven protein engineering, including de novo protein design and the creation of novel enzymes.

🤖

Machine Learning in Biology

AI-guided protein design, computational biology, and generative models for biological sequence, structure, and function.

🧫

Reproductive & Developmental Biology

Molecular and cellular mechanisms governing preimplantation development and lineage tracing.

🧪

Stem Cells & Cellular Plasticity

Mechanisms of stem cell plasticity and regenerative capacity across developmental and adult contexts.

Ageing & Cellular Rejuvenation

Molecular drivers of ageing and strategies for cellular rejuvenation, epigenetic reprogramming, and functional restoration.

🩹

Regenerative Medicine

Translational approaches to tissue repair and regeneration through genome engineering, stem cell technologies, and bioengineering.

🧾

Gene Therapy & Novel Therapeutics

Development of next-generation gene and cell therapies, including programmable genetic interventions and protein-based therapeutics.

Genome engineering technologies

Key papers

Mitochondrial Donation and Preimplantation Genetic Testing for mtDNA Disease.

New England Journal of Medicine

Hyslop LA, Blakely EL, Aushev M, Marley J, Takeda Y, Pyle A, Moody E, Feeney C, Dutton J, Shaw C, Smith SJ, Craig K, Alston CL, Lister L, Endacott K, Byerley S, McDermott H, Wilson K, Botham L, Matthew B, Prathalingam N, Prior M, Murdoch A, Turnbull DM, Hudson G, Choudhary M, Taylor RW, Pillai RN, Stewart JA, McFarland R, Herbert M. (2025). 393, 438-449. DOI: 10.1056/NEJMoa241553

A Cell-Based Optimised Approach for Rapid and Efficient Gene Editing of Human Pluripotent Stem Cells.

International Journal of Molecular Sciences

Cuevas-Ocaña S, Yang JY, Aushev M, Schlossmacher G, Bear CE, Hannan NRF, Perkins ND, Rossant J, Wong AP, Gray MA. (2023). 24, 10266. DOI: 10.3390/ijms241210266

Parental genome unification is highly error-prone in mammalian embryos.

Cell

Cavazza T, Takeda Y, Politi AZ, Aushev M, Aldag P, Baker C, Choudhary M, Bucevičius J, Lukinavičius G, Elder K, Blayney M, Lucas-Hahn A, Niemannn H, Herbert M, Schuh M. (2021). 184, 2860-2877. DOI: 10.1016/j.cell.2021.04.013

Gene expression is stable in a complete CIB1 knockout keratinocyte model.

Scientific Reports

Imahorn E, Aushev M, Herms S, Hoffmann P, Cichon S, Reichelt J, Itin P, Burger B. (2020). 10, 14952. DOI: 10.1038/s41598-020-71889-9

Arginine- but not alanine-rich carboxy-termini trigger nuclear translocation of mutant keratin 10 in ichthyosis with confetti.

Journal of Cellular and Molecular Medicine

Renz P, Imahorn E, Spoerri I, Aushev M, March OP, Wariwoda H, von Arb S, Volz A, Itin PH, Reichelt J, Burger B. (2019). 23, 8442-8452. DOI: 10.1111/jcmm.14727

Traceless targeting and isolation of gene edited immortalised keratinocytes from epidermolysis bullosa simplex patients.

Molecular Therapy: Methods & Clinical Development

Aushev M, Koller U, Mussolino C, Cathomen T, Reichelt J. (2017). 6, 112-123. DOI: 10.1016/j.omtm.2017.06.008

Fun projects

Podcast: Made the Same Way

I participated in a podcast series entitled Made the Same Way, a collaboration between Reform Radio (Manchester) and the Human Developmental Biology Initiative. In the podcast series, young artists and researchers come together and discuss science and music.

3D rendering

3D render

From super-resolution to 3D: a closer look at the human egg.

3D reconstruction and render of a human egg showing total mitochondrial content. The reconstruction was made by taking hundreds of images of a living human egg.

3D render

3D render of Streptococcus pyogenes CRISPR-Cas9 in complex with single-guided RNA and double-stranded DNA.

Mobile game: TurboJack

Together with Sevastianos Ntzokas I developed TurboJack, a fast-paced and dynamic 2D adventure platformer. A free demo of the game is available on Google Play Store.

Please reach out

Particularly interested in scientist and computational roles spanning genome and protein engineering, molecular and cell biology, and interdisciplinary R&D.

“I enjoy building molecular machines and applying them to difficult scientific problems.”